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They have separate power setups. The Sticks use a fixed 1.8v and the Triggers are a pulsed 3.3v. Since LT is also not acting funky I'd say the power rail for the Triggers is probably fine, so that only leaves the Hall Sensor for RT (U10) or the handful of it's support components, a Resistor and a couple of Caps.
Top board is only 5v to 3v, then 3v to 3.3v and 3.5v regulation, and then most of the buttons. The Trigger power comes from U9 (pulsed by the MCU) but since LT isn't acting up I'd rule it out for now. Could be the board has a crack in it somewhere or a really funky via, could be something I've never seen before,. https://www.acidmods.com/forum/index.php/topic,44309.0.html